PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012446m
Common NameCICLE_v10012016mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 274aa    MW: 31706.1 Da    PI: 8.2181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012446mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000712547123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C +Cg + s ks+  +Hi tH
  Ciclev10012446m 25 YYCDYCGICRSKKSLILSHIATH 47
                     89********************6 PP

2zf-C2H221.84.9e-076889223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cg sF+ + +Lk+H+ +H
  Ciclev10012446m 68 TCEECGASFKKPAYLKQHMLSH 89
                     7*******************99 PP

3zf-C2H218.17.4e-0695119123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+  dC+ s++rk++L+rH+ +H
  Ciclev10012446m  95 FRCSvdDCHASYRRKDHLTRHLLRH 119
                      89*********************99 PP

4zf-C2H215.74.2e-05124149123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      +kCp  +C++ F+ + n+krH +  H
  Ciclev10012446m 124 FKCPieNCNREFTIQGNMKRHVKElH 149
                      89********************9986 PP

5zf-C2H218.74.9e-06164188123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+   Cgk+F+  s L++H  +H
  Ciclev10012446m 164 YICQeiGCGKVFKYASKLRQHEDSH 188
                      89*******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9332552IPR007087Zinc finger, C2H2
SMARTSM00355212547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5286794IPR007087Zinc finger, C2H2
SMARTSM003550.00886789IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-86895IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.53E-1068119No hitNo description
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
PROSITE profilePS501579.82795124IPR007087Zinc finger, C2H2
SMARTSM003550.006695119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-996121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-6122146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.81E-7122150No hitNo description
PROSITE profilePS5015710.637124155IPR007087Zinc finger, C2H2
SMARTSM003550.0015124149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-8156188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.55E-5160188No hitNo description
PROSITE profilePS5015711.24164193IPR007087Zinc finger, C2H2
SMARTSM003550.0033164188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SMARTSM003553.6196221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM0035520224245IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEEVSDMEEE KGLEERPKSR VVRRYYCDYC GICRSKKSLI LSHIATHHKE DEERVDGDGE  60
TKGVQCNTCE ECGASFKKPA YLKQHMLSHL LERPFRCSVD DCHASYRRKD HLTRHLLRHQ  120
GKLFKCPIEN CNREFTIQGN MKRHVKELHH EGTTSTDSGD QKQYICQEIG CGKVFKYASK  180
LRQHEDSHVN LDSVEAFCSA PGCMKYFTNK QCLEAHIRSC HQYIPCEICG SMQLKKNIKR  240
HVRTHEARDL SERIKCQFKG CLLSFSTVRS SDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-177122719165PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-177122719165PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430923.10.0hypothetical protein CICLE_v10012016mg
SwissprotQ84MZ42e-97TF3A_ARATH; Transcription factor IIIA
TrEMBLV4S9K10.0V4S9K1_9R
STRINGPOPTR_0013s11300.11e-127(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-98transcription factor IIIA